Quantitative Bio-Imaging Lab

📍 CCMAR - Portugal

Publications 📰

QBI’s journal publications and conference proceedings


E Moya-SĂĄez, R MenchĂłn-Lara, J SĂĄnchez-GonzĂĄlez, C N Carvalho, A S Gaspar, C Real, C GalĂĄn-Arriola, R G Nunes, B Ibanez, T M Correia, C Alberola-LĂłpez. K-CC-MoCo: A Fast k-Space-Based Respiratory Motion Correction for Highly Accelerated First-Pass Perfusion Cardiovascular MR Magn Reson Imaging (2026). https://doi.org/10.1002/mrm.70287

G Ferrazzi, C Galån-Arriola, C Velasco Jimeno, C Real, M Ghidara, G López-Martín, T Correia, B Ibåñez, J Sånchez-Gonzålez. Towards whole-heart quantitative myocardial perfusion using a dual-sequence framework with multiband acceleration bioRxiv 2025.08.20.666501 (2025). https://doi.org/10.1101/2025.08.20.666501

T Olausson, M Terpstra, N Huttinga, C Beijst, N Blanken, D Suchá, T Correia, B Velthuis, C Berg, A Sbrizzi. Free-Running Time-Resolved First-Pass Myocardial Perfusion Using a Multi-Scale Dynamics Decomposition: CMR-MOTUS Magn Reson Mater Phy 1–14 (2025). https://doi.org/10.1007/s10334-025-01291-x

S Silva, T Correia, M Manchado, D Power. Metamorphosis-associated immune system maturation in Senegalese sole Gen Comp Endocrinol 369, 114755 (2025). https://doi.org/10.1016/j.ygcen.2025.114755

M Vitali, A Candeo, A Farina, P Pozzi, A Brix, A Bassi, T Correia. Accelerated dynamic light sheet microscopy: unifying time-varying patterned illumination and low-rank and sparsity constrained reconstruction J Phys Photonics 7, 025005 (2025). https://doi.org/10.1088/2515-7647/adad23

C Carvalho, A Gaspar, C Real, J Sånchez-Gonzålez, R Nunes, B Ibåñez, T Correia. Quantitative First-Pass Perfusion CMR: From Technical Principles to Clinical Practice arXiv 2502.13084 (2025). https://doi.org/10.48550/arXiv.2502.13084

T Olausson, M Terpstra, N Huttinga, C Beijst, N Blanken, T Correia, D SuchĂĄ, B Velthuis, C Berg, A Sbrizzi. Free-Running Time-Resolved First-Pass Myocardial Perfusion Using a Multi-Scale Dynamics Decomposition: CMR-MOTUS arXiv 2410.21011 (2024). https://doi.org/10.48550/arXiv.2410.21011

R FĂ©lix, D Palecek, T Correia. Colour science with lasers, gummy bears, and rainbows Science in School TEACH 66 (2024). https://doi.org/10.5281/zenodo.10609154

M Obando, A Bassi, N Ducros, G Mato, T Correia. Model-based deep learning framework for accelerated optical projection tomography Sci Rep 13, 21735 (2023). https://doi.org/10.1038/s41598-023-47650-3

T Correia. InteligĂȘncia artificial na ressonĂąncia magnĂ©tica cardĂ­aca – o impulso que faltava? LIFESAVING 29, 13–15 (2023).https://doi.org/10.5281/zenodo.10418257

M Obando, A Bassi, N Ducros, G Mato, T Correia. ToMoDL: A model-based deep learning framework for optical projection tomography Research Square (2023). https://doi.org/10.21203/rs.3.rs-3318045/v1

T Ismail, W Strugnell, C Coletti, M BoĆŸic-Iven, S WeingĂ€rtner, K Hammernik, T Correia†, T KĂŒstner†. Cardiac MR: From Theory to Practice Front Cardiovasc Med 9, 826283 (2022). https://doi.org/10.3389/fcvm.2022.826283

J Tourais, C Scannell, T Schneider, E Alskaf, R Crawley, F Bosio, J Sanchez-Gonzalez, M Doneva, C SchĂŒlke, J Meineke, J Keupp, J Smink, M Breeuwer, A Chiribiri, M Henningsson, T Correia. High-Resolution Free-Breathing Quantitative First-Pass Perfusion Cardiac MR Using Dual-Echo Dixon With Spatio-Temporal Acceleration Front Cardiovasc Med 9, 884221 (2022). https://doi.org/10.3389/fcvm.2022.884221

A Lalande, Z Chen, T Pommier, T Decourselle, A Qayyum, M Salomon, D Ginhac, Y Skandarani, A Boucher, K Brahim, M de Bruijne, R Camarasa, T Correia, X Feng, K Girum, A Hennemuth, M Huellebrand, R Hussain, M Ivantsits, J Ma, C Meyer, R Sharma, J Shi, N Tsekos, M Varela, X Wang, S Yang, H Zhang, Y Zhang, Y Zhou, X Zhuang, R Couturier, F Meriaudeau. Deep learning methods for automatic evaluation of delayed enhancement-MRI. The results of the EMIDEC challenge Med Image Anal 79, 102428 (2022). https://doi.org/10.1016/j.media.2022.102428

E MartĂ­n-GonzĂĄlez, E Alskaf, A Chiribiri, P Casaseca-de-la-Higuera, C Alberola-LĂłpez, R Nunes, T Correia. Physics-Informed Self-supervised Deep Learning Reconstruction for Accelerated First-Pass Perfusion Cardiac MRI. In: Haq N., Johnson P., Maier A., WĂŒrfl T., Yoo J. (eds) Machine Learning for Medical Image Reconstruction. MLMIR 2021. Lecture Notes in Computer Science, vol 12964. Springer, Cham. https://doi.org/10.1007/978-3-030-88552-6_9

A Lourenço, E Kerfoot, I Grigorescu, C Scannell, M Varela†, T Correia†. Automatic Myocardial Disease Prediction from Delayed-Enhancement Cardiac MRI and Clinical Information. In: Puyol Anton E. et al. (eds) Statistical Atlases and Computational Models of the Heart. M&Ms and EMIDEC Challenges. STACOM 2020. Lecture Notes in Computer Science, vol 12592. Springer (2021). https://doi.org/10.1007/978-3-030-68107-4_34 OR arXiv:2010.08469 (2nd place in the live classification challenge).

A Lourenço, E Kerfoot, C Dibblin, E Alskaf, M Anjari, A Bharath, A King, H Chubb, M Varela†, T Correia†. Left Atrial Ejection Fraction Estimation Using SEGANet for Fully Automated Segmentation of CINE MRI. In: Puyol Anton E. et al. (eds) Statistical Atlases and Computational Models of the Heart. M&Ms and EMIDEC Challenges. STACOM 2020. Lecture Notes in Computer Science, vol 12592. Springer (2021). https://doi.org/10.1007/978-3-030-68107-4_14 OR arXiv:2008.13718

T Correia, G Ginami, I Rashid, G Nordio, R Hajhosseiny, T Ismail, R Neji, R Botnar, C Prieto. Accelerated high-resolution free-breathing 3D whole-heart T2-prepared black-blood and bright-blood cardiovascular magnetic resonance. J Cardiovasc Magn Reson 22, 88 (2020). https://doi.org/10.1186/s12968-020-00691-3

A Bustin, I Rashid, Cruz, R Hajhosseiny, T Correia, R Neji, R Rajani, T Ismail, R Botnar, C Prieto. 3D whole-heart isotropic sub-millimeter resolution coronary magnetic resonance angiography with non-rigid motion-compensated PROST. J Cardiovasc Magn Reson 22, 24 (2020). https://doi.org/10.1186/s12968-020-00611-5

C Scannell, T Correia, A Villa, T Schneider, J Lee, M Breeuwer, A Chiribiri, M Henningsson. Feasibility of free-breathing quantitative myocardial perfusion using multi-echo Dixon magnetic resonance imaging. Sci Rep 10, 12684 (2020). https://doi.org/10.1038/s41598-020-69747-9

G Nordio, T Schneider, G Cruz, T Correia, A Bustin, C Prieto, R Botnar, M Henningsson. Whole‐heart T1 mapping using a 2D fat image navigator for respiratory motion compensation. Magn Reson Med; 83: 178– 187 (2020). https://doi.org/10.1002/mrm.27919

VM Velasco Forte, I Valverde, N Prabhu, T Correia, S Narayan, A Bell, S Mathur, R Razavi, T Hussain, K Pushparajah, M Henningsson. Visualization of coronary arteries in paediatric patients using whole-heart coronary magnetic resonance angiography: comparison of image-navigation and the standard approach for respiratory motion compensation. J Cardiovasc Magn Reson 21, 13 (2019). https://doi.org/10.1186/s12968-019-0525-8

T Correia, T Schneider, A Chiribiri. A Model-Based Reconstruction for Highly Accelerated First-Pass Perfusion Cardiac MRI. In: Shen D. et al. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2019. MICCAI 2019. Lecture Notes in Computer Science, vol 11765. Springer (2019). https://doi.org/10.1007/978-3-030-32245-8_57

A Bustin, G Ginami G, G Cruz, T Correia, T Ismail, I Rashid, R Neji, R Botnar, C Prieto. Five‐minute whole‐heart coronary MRA with sub‐millimeter isotropic resolution, 100% respiratory scan efficiency, and 3D‐PROST reconstruction. Magn Reson Med 81: 102– 115 (2018). https://doi.org/10.1002/mrm.27354

T Correia, G Ginami, G Cruz, R, Neji, I Rashid, R Botnar, C Prieto. Optimized respiratory‐resolved motion‐compensated 3D Cartesian coronary MR angiography. Magn Reson Med 80: 2618– 2629 (2018). https://doi.org/10.1002/mrm.27208

S Davis, L Wisniewski, S Kumar, T Correia, S Arridge, P Frankel, J McGinty, P French. Slice-illuminated optical projection tomography. Opt Lett 43, 5555-5558 (2018). https://doi.org/10.1364/OL.43.005555

T Correia, G Cruz, T Schneider, R Botnar, C Prieto. Accelerated nonrigid motion‐compensated isotropic 3D coronary MR angiography. Med Phys 45: 214-222 (2018). https://doi.org/10.1002/mp.12663

N Ducros, T Correia, A Bassi, G Valentini, S Arridge, C D'Andrea. Reconstruction of an optical inhomogeneity map improves fluorescence diffuse optical tomography. Biomedical Physics & Engineering Express 2(5): 055020 (2016). https://doi.org/10.1088/2057-1976/2/5/055020

S Kumar†, N Lockwood†, M Ramel, T Correia, M Ellis, Y Alexandrov, N Andrews, R Patel, L Bugeon, M Dallman, S Brandner, S Arridge, M Katan, J McGinty, P Frankel, P French. Quantitative in vivo optical tomography of cancer progression & vasculature development in adult zebrafish. Oncotarget 7: 43939-43948 (2016). https://doi.org/10.18632/oncotarget.9756

T Correia, M Koch, A Ale, V Ntziachristos, S Arridge. Patch-based anisotropic diffusion scheme for fluorescence diffuse optical tomography—part 2: image reconstruction. Physics in Medicine and Biology 61(4): 1439-1451 (2016). https://doi.org/10.1088/0031-9155/61/4/1452

T Correia T, S Arridge. Patch-based anisotropic diffusion scheme for fluorescence diffuse optical tomography—part 1: technical principles. Physics in Medicine and Biology 61(4): 1452-1475 (2016). https://doi.org/10.1088/0031-9155/61/4/1439

T Correia, N Lockwood, S Kumar, J Yin, M Ramel, N Andrews, M Katan, L Bugeon, M J Dallman, J McGinty, P Frankel, P French, Simon Arridge. Accelerated Optical Projection Tomography Applied to In Vivo Imaging of Zebrafish. PLOS ONE 10(8): e0136213 (2015). https://doi.org/10.1371/journal.pone.0136213

L Dempsey, R Cooper, T Roque, T Correia, E Magee, S Powell, A Gibson, J Hebden. Data-driven approach to optimum wavelength selection for diffuse optical imaging. J Biomed Opt 20(1) 016003 (2015). https://doi.org/10.1117/1.JBO.20.1.016003

V Soloviev, T Correia, S Arridge. Fluorescence lifetime measurements in turbid media. in Fluorescence Lifetime Spectroscopy and Imaging for tissue biomedical diagnostics, ed. by L Marcu, P French, D Elson, 283-322, CRC Press (2014). https://doi.org/10.1201/b17018

T Correia, T Rudge, M Koch, V Ntziachristos, S Arridge. Wavelet-based data and solution compression for efficient image reconstruction in fluorescence diffuse optical tomography. J Biomed Opt 18(8) 086008 (2013). https://doi.org/10.1117/1.JBO.18.8.086008

J Chamorro-Servent, J F P-J Abascal, J Aguirre, S Arridge, T Correia, J Ripoll, M Desco, J J Vaquero. Use of Split Bregman denoising for iterative reconstruction in fluorescence diffuse optical tomography. J Biomed Opt 18(7) 076016 (2013). https://doi.org/10.1117/1.JBO.18.7.076016

T Correia, N Ducros, C D’Andrea, M Schweiger, S Arridge. Quantitative fluorescence diffuse optical tomography in the presence of heterogeneities.Opt Lett 38, 1903-1905 (2013). https://doi.org/10.1364/OL.38.001903

V Soloviev, G Zacharakis, G Spiliopoulos, R Favicchio, T Correia, S Arridge, J Ripoll. Tomographic imaging with polarized light. J. Opt. Soc. Am. A 29, 980-988 (2012). https://doi.org/10.1364/JOSAA.29.000980

T Correia, S Lloyd-Fox, N Everdell, A Blasi, C Elwell, J Hebden A Gibson. Three-dimensional optical topography of brain activity in infants watching videos of human movement. Physics in Medicine and Biology 57(5): 1135-1146 (2012).  https://doi.org/10.1088/0031-9155/57/5/1135

J F P-J Abascal, J Chamorro-Servent, J Aguirre, S Arridge, T Correia, J Ripoll, J J Vaquero, M Desco. Fluorescence diffuse optical tomography using the split Bregman method. Med. Phys., 38: 6275-6284 (2011). https://doi.org/10.1118/1.3656063

T Correia, J Aguirre, A Sisniega, J Chamorro-Servent, J Abascal, J J. Vaquero, M Desco, V Kolehmainen, S Arridge. Split operator method for fluorescence diffuse optical tomography using anisotropic diffusion regularisation with prior anatomical information. Biomed. Opt. Express 2, 2632-2648 (2011). https://doi.org/10.1364/BOE.2.002632

T Correia, A Gibson, J Hebden. Identification of the optimal wavelengths for optical topography: a photon measurement density function analysis. J. Biomed. Opt. 15(5) 056002 (2010).  https://doi.org/10.1117/1.3484747

T Correia, A Banga, N L Everdell, A P Gibson, J C Hebden. A quantitative assessment of the depth sensitivity of an optical topography system using a solid dynamic tissue-phantom. Physics in Medicine and Biology 54(20): 6277-6286 (2009).  https://doi.org/10.1088/0031-9155/54/20/016

T Correia, A Gibson, M Schweiger, J Hebden. Selection of regularization parameter for optical topography. J. Biomed. Opt. 14(3) 034044 (2009). https://doi.org/10.1117/1.3156839

J C Hebden, T Correia, I Khakoo, A P Gibson, N L Everdell. A dynamic optical imaging phantom based on an array of semiconductor diodes. Physics in Medicine and Biology 53(21): N407-N413 (2008). https://doi.org/10.1088/0031-9155/53/21/N01

J C Hebden, J Brunker, T Correia, B D Price, A P Gibson, N L Everdell. An electrically-activated dynamic tissue-equivalent phantom for assessment of diffuse optical imaging systems. Physics in Medicine and Biology 53(2): 329-337 (2007). https://doi.org/10.1088/0031-9155/53/2/002


Conference Proceedings


S Ferraz, MN Trinh, J Santinha, T Correia. Automated Quantitative MRI Reporting with Segmentation-Enhanced Multimodal Large Language Models. 34th ISMRM meeting, 2335 (2026).

E Moya‐SĂĄez, E MartĂ­n-GonzĂĄlez, R MenchĂłn‐Lara, J SĂĄnchez‐GonzĂĄlez, C Real, C GalĂĄn‐Arriola, R G Nunes, B Ibåñez, C Alberola‐LĂłpez, T M Correia. Self-supervised deep learning reconstruction with k-space motion correction for accelerated First-Pass Perfusion Cardiac MRI. 34th ISMRM, 00616 (2026).

MN Trinh, T Correia. “A Fraction of the Cost: Portable, Low-Cost and Energy-Efficient AI-Driven MRI analysis on Raspberry Pi and NVIDIA Jetson Nano” 34th ISMRM, 804 (2026).

J Santinha, M Antunes, MN Trinh, J Augusto, S Rosa, T Correia. “AI-driven Automated Risk Prediction of Ventricular Arrhythmias and Sudden Death from Late Gadolinium Enhancement Cardiac MRI” 34th ISMRM, 1628 (2026).

C Carvalho, A Gaspar, R Nunes, T Correia. “Extended Phase Graph-Informed Deep Learning for Accelerated and Improved Joint T1 and T2 Cardiac Mapping”. 34th ISMRM, Cape Town, South Africa, 23 (2026).

A Gaspar, N Stewart, J Nielsen, C Tang, P Hughes, M Schwartz, S ThalĂ©n, C Castillo-Passi, D Ennis, J Wild, T KĂŒstner, T Correia, R Nunes. “Multicenter Assessment of Open-MOLLI: A Cross-Vendor T1 Mapping Study”. 34th ISMRM, 6767 (2026).

MN Trinh, M Obando, D Palecek, G Mato, T Correia. Napari-ToMoDL: Fast and Easy 3D Tomographic Reconstruction with Deep Learning. 21st EMIM, PS 10-07 (2026). emim26_PS10-07

M Obando, MN Trinh D Palecek, G Mato, T Correia. AI-Powered Software for Fast Optical Projection Tomography. Finnish-French Workshop on Biomedical Optical Tomography (2026).

MN Trinh, M Obando, D Palecek, G Mato, T Correia. Napari-ToMoDL: A Python-based napari plugin for fast and reliable tomographic image reconstruction. 9th SPAOM (2025).

L Hermane, S Silva, R FĂ©lix, D Power, T Correia. A Clear(ing) View into Marine Organisms. 9th SPAOM (2025).

S Martins, C Santos, M Mendes, E Couto, L Hermane, T Correia, R Rosa, D Power. Impact of marine heatwaves on the intestinal structure of adult small-spotted catsharks. 9th SPAOM (2025).

J Santinha, MN Trinh, T Correia. Fully Automated Deep Learning and Radiomics Pipeline for Assessing Myocardial Infarction and Microvascular Obstruction. 5th ISMRM Iberian Chapter Annual Meeting, O1 (2025).

A Gaspar, P Hughes, J Nielsen, N Stewart, J Wild, T Correia, R Nunes. Open- MOLLI for All: Advancing Open-Source, Vendor-Agnostic T1-mapping One System at a Time, Now on GE!. 5th ISMRM Iberian Chapter Annual Meeting (2025).

C Carvalho, Gaspar A, R Nunes, T Correia. Myocardial T1 Mapping with PENGUIN. 5th ISMRM Iberian Chapter Annual Meeting (2025).

S Silva, T Correia, M Manchado, D Power. Thyroid hormones regulate innate and adaptive immune competence during metamorphosis. XV ISGA (2025).

S Silva, T Correia, M Manchado, D Power. Reprogramming immune system competence with ÎČ-glucan during development. XV ISGA (2025).

T Correia. Quantification of Cardiac Perfusion During Rest & Stress (Before & After Fado/Samba) Quantificação De Perfusão Cardíaca Em Repouso E Esforço (Depois Do Fado E Samba). 33rd ISMRT/ISMRM (2025). ismrt25_M03 (ismrm members only)

J Santinha, P Morão, Y Forghani, N Loução, T Correia, P Gouveia, M Figueiredo. Counterfactual MRI Data Augmentation using Conditional Denoising Diffusion Models: training AI for different clinical scenarios. 33rd ISMRM, 3247 (2025). ismrt25_3247 (ismrm members only)

J Santinha, MN Trinh, T Correia. Combining deep learning and radiomics for a fully automated and reproducible assessment of myocardial viability. 33rd ISMRM, 4182 (2025). ismrt25_4182 (ismrm members only)

J Santos, P OsĂłrio, M Henningsson, R Nunes, T Correia. DeepPlanner4Cardio: an automatic multi-view planning tool for CMR. 33rd ISMRM, 1966 (2025). ismrt25_1966 (ismrm members only)

C Carvalho, A Gaspar, R Nunes, T Correia. Accelerated and Accurate Myocardial T1 Mapping with PENGUIN: Combining Deep Learning with Extended Phase Graph Modeling. 33rd ISMRM, 1094 (2025). ismrt25_1094 (ismrm members only)

E Moya-SĂĄez, R MenchĂłn-Lara, J Sanchez-Gonzalez, R Nunes, C Real, C GalĂĄn-Arriola, B Ibanez, T Correia, C Alberola-LĂłpez. K-CC-MoCo: A fast respiratory motion correction in coil-compressed K-space for highly accelerated first-pass perfusion cardiac MRI. 33rd ISMRM, 29 (2025). ismrt25_29 (ismrm members only)

A Gaspar, T KĂŒstner, M Schwartz, T Correia, R Nunes. Cardiac T1-mapping using Open-MOLLI at 3T: a repeatability study. 33rd ISMRM, 1665 (2025). ismrt25_1665 (ismrm members only)

A Gaspar, P Hughes, J Nielsen, N Stewart, J Wild, T Correia, R Nunes. In vivo T1-mapping using Open-MOLLI in GE scanners. 33rd ISMRM, 1967 (2025). ismrt25_1967 (ismrm members only)

T Correia, Stress Cardiac MR Perfusion: Challenges & New Direction, ISMRM Workshop on Perfusion MRI: Found in Translation (2025). ismrt25_perfusion (ismrm members only)

J Santinha, MN Trinh, T Correia. End-to-end AI assessment of myocardial viability: a deep learning and radiomics pipeline for reproducible and automated evaluation of myocardial infarction and microvascular obstruction. 20th EMIM, PS 10-02 (2025). emim25_PS10-02

L Hermane, R FĂ©lix, C Egger, J Paysan, D Lauer, A Engelen, D Power, M Coelho, T Correia. New Angle on Coral Imaging: Lightsheet Microscopy for Enhanced 3D Morphological Studies, 8th SPAOM P17 (2024).

K Walter, T Correia, A Engelen, “The hidden architecture of the giant unicellular algae Caulerpa, 8th SPAOM, P41 (2024).

< p> Gaspar A, KĂŒstner T, Schwartz M, Correia T, Nunes R. Evaluating the repeatability of myocardial T1 mapping using Open-MOLLI at 3T, 40th ESMRMB, 431 (2024). esmrmb24_431

C Carvalho, A Gaspar, R Nunes, T Correia, Accelerated MRI Parametric Mapping with PENGUIN. 4th ISMRM Iberian Chapter Annual Meeting, O1 (2024).

A Gaspar, N Silva, C Carvalho, T Correia, A Ferreira, R Nunes, T1 mapping with radial Open-MOLLI. 4th ISMRM Iberian Chapter Annual Meeting, P40 (2024).

E Moya-SĂĄez, R MechĂłn-Lara, R Nunes, T Correia, C Alberola-LĂłpez, A comparative analysis of different respiratory motion correction approaches in free-breathing first-pass perfusion cardiac MR. 4th ISMRM Iberian Chapter Annual Meeting, P48 (2024).

M Amil, A Gaspar, C Carvalho, A Ferreira, T Correia, R Nunes. Accelerating Cardiac Magnetic Resonance T1-Mapping using an Efficient Deep Learning Reconstruction. 4th ISMRM Iberian Chapter Annual Meeting, P55 (2024).

J Santos, P OsĂłrio, M Henningsson, R Nunes, T Correia, Development of a deep-learning tool for automatic Cardiac CMR planning. 4th ISMRM Iberian Chapter Annual Meeting, P55 (2024).

J Santinha, T Correia, Radiomics Predictive Model of Myocardial Infarction and Microvascular Obstruction. 4th ISMRM Iberian Chapter Annual Meeting, P61 (2024).

A Gaspar, T Correia, T KĂŒstner, M Schwartz, P Martirosian, R Nunes, LOS Mollicators – Evaluating the repeatability of myocardial T1 mapping using Open-MOLLI at 3T - Repeat it With Me: Reproducibility Team Challenge, 32nd ISMRM Meeting, (2024).

T Olausson, M Terpstra, N Huttinga, C Beijst, N Blanken, D SuchĂĄ, T Correia, C van den Berg, A Sbrizz. Time-Resolved Cardiac Function: Myocardium Strain and First-Pass Perfusion Using MR-MOTUS. 32nd ISMRM Meeting, 629 (2024). ismrt24_629 (ismrm members only)

C Carvalho, A Gaspar, R Nunes, T Correia, Integrating Quantitative Mapping into Physics-Based Deep Learning for Improved Accelerated Image Reconstruction. 32nd ISMRM Meeting, 4505 (2024). ismrt24_4505 (ismrm members only)

J Santinha, T Correia, RAMI: Radiomics Predictive Model of Myocardial Infarction and Microvascular Obstruction, 32nd ISMRM Meeting, 3386 (2024). ismrt24_3386 (ismrm members only)

T Correia, The need for speed: accelerating cardiac magnetic resonance exams and beyond, 19th EMIM, Welcome to Portugal!-03 (2024). emim24_WP-03

C Carvalho, R Nunes, T Correia, Improving Accelerated MRI Reconstruction and Parametric Mapping with PENGUIN, 19th EMIM, PS 22-03 (2024). emim24_PS22-03

L Hermane, R FĂ©lix, A Vairinhos, A Gomes, A Andrijanova, T Correia, D Power, Novel computer vision-based Napari plugins to determine nanoparticle effects in cell cultures, 19th EMIM, PW29, DATA-018 (2024). emim24_DATA-018

J Santinha J, T Correia, RAMI: Radiomics for LGE Assessment of Myocardial Infarction and Microvascular Obstruction, AI in Cardiac MR, Journal of Cardiovascular Magnetic Resonance, Volume 26, 100140 (2024). jcmr24_2-58

M Obando, A Bassi, N Ducros, G Mato, T Correia, ToMoDL: A model-based deep learning framework for optical projection tomography, 7th SPAOM, 6 (2023).

S Silva, T Correia, R Felix, M Manchado, D Power (2023), Transcriptomics and lightsheet imaging of Senegalese sole juveniles links the HPT-axis with immune system maturation, 7th SPAOM, 25 (2023).

D Paleček, M Obando, A Lopes, A Bassi, G Mato, R Guerra, G Martins, T Correia, Optical projection tomography in Python: from acquisition to reconstruction, 7th SPAOM, 31 (2023).

C Egger, A Engelen, E Serrao, R Melzer, R Felix, T Correia, M Coelho, Coral Conservation Through Imaging: Unveiling Insights into Cold-Water Sea Fans, 7th SPAOM, 28 (2023).

P OsĂłrio, M Henningsson, A Herrero, R Nunes, T Correia, DeepCardioPlanner: Deep Learning-based tool for automatic CMR planning, 31st ISMRM meeting, 5134 (2023). ismrt23_5134 (ismrm members only)

T Correia, MR Techniques for Quantifying Myocardial Perfusion, 31st ISMRM Meeting, E4505 (2023). ismrt23_M01 (ismrm members only)

C Carvalho, T Correia, R Nunes, Diving into Extended Phase Graph-based Deep Learning for Accurate and Fast T2 Mapping with PENGUIN, 31st ISMRM meeting, 1090 (2023). ismrt23_1090 (ismrm members only)

S Silva, T Correia, R Felix, M Manchado, D Power, “Gene expression profiles and 3D imaging of Senegalese sole larvae links the HPT-axis with immune system maturation, Encontro CiĂȘncia (2023).

M Obando, G Mato, T Correia, ToMoDL: Model-based neural network for tomographic reconstruction, Khipu Meeting (Latin American Meeting In Artificial Intelligence), 32 (2023).

C Carvalho, T Correia, R Nunes. Diving into Extended Phase Graph-based Deep Learning for Accurate and Fast T2 Mapping with PENGUIN, 3rd ISMRM Iberian Chapter Annual Meeting, P2.19 (2023).

P OsĂłrio, M Henningsson, R Nunes, T Correia, Implementation of a deep learning-based tool for automatic Cardiac Magnetic Resonance planning, 2nd ISMRM Iberian Chapter Annual Meeting, P1.09 (2022).

C Carvalho, T Correia, R Nunes, Accelerating T2-map fitting in the brain with a Recurrent Inference Machine, 2nd ISMRM Iberian Chapter Annual Meeting, P2.11 (2022).

S Silva, T Correia, M Manchado, D Power Transcriptomics points to an association between the HPT-axis and immune system maturation before and during Senegalensis sole larvae metamorphosis, 30th CECE & 9th ISFE, O84 (2022).

E MartĂ­n-GonzĂĄlez, E Alskaf, A Chiribiri, P Casaseca-de-la-Higuera, C Alberola-LĂłpez, R Nunes, T Correia. The deep SECRET to accelerated first-pass perfusion cardiac MRI. 30th ISMRM meeting, 299 (2022). ismrm22_299 (ismrm members only)

T Correia, T Schneider, A Chiribiri. The key to extremely accelerated model-based quantitative first-pass perfusion cardiac MRI. 29th ISMRM meeting, 508 (2021). ismrm21_508 (ismrm members only)

C Scannell, T Schneider, E Alskaf, F Bosio, J Tourais, J Sanchez-Gonzalez, M Doneva, C Schuelke, J Meineke, J Keupp, J Smink, M Breeuwer, A Chiribiri, M Henningsson, T Correia. Free-Breathing High-Resolution Quantitative First-Pass Perfusion Cardiac MR using Dual-Echo Dixon. 29th ISMRM meeting, 992 (2021). ismrm21_992 (ismrm members only)

T Correia, T Schneider, A Chiribiri. The key to an efficient model-based reconstruction of extremely accelerated first-pass perfusion CMR. 24th SCMR meeting (2021).

M Obando, A Bassi, N Ducros, G Mato, T Correia, Real-time 3D Optical Projection Tomography using Deep learning, 5th SPAOM (2021).

M Varela, M Anjari, T Correia, R Zakeri, E Alskaf, A Chiribiri, J Lee. High-resolution CINE MRI allows estimation of 3D regional atrial strains. European Heart Journal, Volume 41, Issue Supplement_2, ehaa946.0244 (2020). https://doi.org/10.1093/ehjci/ehaa946.0244

A Lourenco, E Kerfoot, C Dibblin, H Chubb, A Bharath, M Varela†, T Correia†. Automatic estimation of left atrial function from short-axis CINE-MRI using machine learning. European Heart Journal, Volume 41, Issue Supplement_2, ehaa946.0229 (2020). https://doi.org/10.1093/ehjci/ehaa946.0229

J Tourais, T Schneider, C Scannell, R Franks, J Sanchez-Gonzalez, M Doneva, C Schuelke, J Meineke, J Keupp, J Smink, M Breeuwer, A Chiribiri, M Henningsson, T Correia. High-Resolution Free-Breathing Quantitative Myocardial Perfusion MRI Using Multi-Echo Dixon. 28th ISMRM meeting, 1315 (2020). ismrm20_1315 (ismrm members only)

T Correia, T Schneider, A Chiribiri. Model-based quantitative mapping for highly accelerated ïŹrst-pass perfusion cardiac MRI. 28th ISMRM meeting, 1017 (2020). ismrm20_1017 (ismrm members only)

T Correia, T Schneider, A Chiribiri. Direct parametric reconstruction for highly accelerated first-pass myocardial perfusion MR imaging. 23rd SCMR meeting, 745181 (2020). download conference proceedings (large file)

M Varela, S Queiros, M Anjari, T Correia, A King, A Bharath, J Lee. Strain maps of the left atrium imaged with a novel high-resolution CINE MRI protocol. 42nd Annual International Conferences of the IEEE Engineering in Medicine and Biology Society: Enabling Innovative Technologies for Global Healthcare, EMBC 2020. 1178-1181 (2020). doi: 10.1109/EMBC44109.2020.9175383.

J Tourais, T Schneider, C Scannell, R Franks, J Sanchez-Gonzalez, M Doneva, C Schuelke, J Meineke, J Keupp, J Smink, M Breeuwer, A Chiribiri, M Henningsson, T Correia. High-Resolution Free-Breathing Quantitative Myocardial Perfusion MRI Using Multi-Echo Dixon. 12th ISMRM Benelux meeting (2020).

Y Yang, F Mo, S Xu, M Dhom, A Pike, T Maeda, M Vaicik, R Furman, T Correia, R Hoshino, K Kawaji. Compressed Sensing MRI Revisited via Mathematics Problem-Solving Principles in BME. Biomedical Engineering Society (BMES) Annual Meeting, P-SAT-242 (2019).

M Dhom, M Davis, A Julian, J Goes, T Correia, M Vaicik, K Kawaji. Two Alternative LED Control System Designs for Pulse Oximetry-based Simulation of the Heart. Biomedical Engineering Society (BMES) Annual Meeting, P-SAT-251 (2019).

J Tourais, T Schneider, X Milidonis, D Higgins, J Scanchez-Gonzalez, G Cruz, C Prieto, C Saunderson, L Brown, S Plein, A Chiribiri, J Smink, T Correia. High-Resolution motion-corrected 2D Myocardial Perfusion MRI using Locally Low-Rank and Wavelet Sparsity Constraints. 27th ISMRM meeting, 1238 (2019). ismrm19_1238 (ismrm members only)

T Correia, G Ginami, A Bustin, R Neji, R Botnar, C Prieto. XD-ORCCA for BOOST: accelerated motion-compensated simultaneous bright- and black-blood 3D whole-heart coronary MRI. 27th ISMRM meeting, 460 (2019). ismrm19_460 (ismrm members only)

T Correia, I Rashid, G Ginami, T Ismail, R Neji, R Botnar, C Prieto. Simultaneous High-resolution 3D Whole-heart Bright-Blood Coronary Angiography and Black-Blood Late Gadolinium Enhancement (LGE). 27th ISMRM meeting, 2040 (2019). ismrm19_2040 (ismrm members only)

T Kuestner, A Bustin, G Cruz, T Correia, G Ginami, R Neji, R Botnar, C Prieto. 3D Cartesian Free-running Cardiac and Respiratory Resolved Whole-heart MRI. 27th ISMRM meeting, 2192 (2019). ismrm19_2192 (ismrm members only)

I Rashid, A Bustin, T Correia, G Ginami, R Neji, K Kunze, T Ismail, R Rajani, C Prieto, R Botnar. Sub-millimeter, Non-contrast 3D Coronary MRA for Assessment of Arterial Stenosis: Initial Clinical Experience and Comparison with Coronary CT Angiography. 27th ISMRM meeting, 976 (2019). ismrm19_976 (ismrm members only)

A Gaspar, A Bustin, K Kunze, R Neji, T Correia, N Silva, R Nunes, R Botnar, C Prieto. Accelerated Carotid 4D flow MRI with Multicontrast HD-PROST Reconstruction. 27th ISMRM meeting, 1963 (2019). ismrm19_1963 (ismrm members only)

A Bustin, T Correia, I Rashid, G Cruz, R Neji, R Botnar, C Prieto. Highly Accelerated 3D Whole-Heart Isotropic Sub-Millimeter CMRA with Non-Rigid Motion Correction. 27th ISMRM meeting, 2205 (2019). ismrm19_978 (ismrm members only)

C Munoz, R Neji, K Kunze, T Correia, C Forman, M Schmidt, I Rashid, R Botnar, C Prieto. Motion-Compensated 3D Whole-heart Water-Fat Late Gadolinium Enhancement Imaging for Assessment of Myocardial Viability. 27th ISMRM meeting, 420 (2019). ismrm19_782 (ismrm members only)

J Tourais, T Schneider, X Milidonis, D Higgins, J Sanchez-Gonzalez, G Cruz, C Prieto, C Saunderson, L Brown, S Plein, A Chiribiri, J Smink, T Correia. High-Resolution motion-corrected 2D Myocardial Perfusion MRI using Locally Low Rank and Wavelet Sparsity Constraints. ISMRM Benelux meeting (2019).

A Bustin, T Correia, I Rashid, G Cruz, R Neji, R Botnar, C Prieto. Isotropic sub-millimetre CMRA: combining high undersampling with non-rigid motion correction. 22nd SCMR meeting, 549747 (2019). download conference proceedings (large file)

T Correia, I Rashid, G Ginami, R Neji, R Botnar, C Prieto. Simultaneous 3D Whole-heart High-resolution Black-blood LGE and Coronary Angiography Imaging. 22nd SCMR meeting, 551428 (2019). download conference proceedings (large file)

G Nordio, T Schneider, G Cruz, T Correia, A Bustin, C Prieto, R Botnar, M Henningsson. 3D myocardial T1 mapping combined with a 2D fat image navigator. 22nd SCMR meeting, 547215 (2019). download conference proceedings (large file)

T Kuestner, A Bustin, G Cruz, T Correia, G Ginami, R Neji, R Botnar, C Prieto. Towards 3D Cartesian isotropic free-running cardiac and respiratory resolved whole-heart MRI. 22nd SCMR meeting, 549855 (2019). download conference proceedings (large file)

S Davis, S Kumar, L Wisniewski, M Ramel, L Bugeon, T Correia, M Dallman, S Arridge, P Frankel, J McGinty, P French. Exploiting patterned illumination and detection in optical projection tomography. Proc. SPIE BIOS 10883, Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVI, 108830M (2019). https://doi.org/10.1117/12.2508653

T Correia, I Rashid, G Ginami, G Cruz, R Neji, R Botnar, C Prieto. Respiratory-resolved motion-compensated 3D Cartesian Coronary MR angiography. BC-ISMRM meeting, O26 (2018).

T Correia, I Rashid, G Ginami, G Cruz, R Neji, R Botnar, C Prieto. XD-ORCCA: Optimized respiratory-resolved 3D Cartesian coronary MRA. Society for Magnetic Resonance Angiography, 30th SMRA meeting, A33, (2018). download conference proceedings

T Correia, G Ginami, G Cruz, R Neji, I Rashid, R Botnar, C Prieto. Assessment of respiratory motion-resolved and nonrigid motion-corrected 3D Cartesian coronary MRA. Joint ISMRM-ESMRMB meeting, 473 (2018). ismrm18_473 (ismrm members only)

T Correia, G Ginami, R Neji, G Cruz, R Botnar and C Prieto. Optimized respiratory-resolved motion-compensated 3D Cartesian coronary MRA. Joint ISMRM-ESMRMB meeting, 772 (2018). ismrm18_772 (ismrm members only)

A Bustin, G Ginami, I Rashid, T Correia, T Ismail, R Neji, R Botnar, C Prieto. 3D-Patch-Based Low-Rank Reconstruction (PROST) for Highly-Accelerated CMRA Acquisition. Joint ISMRM-ESMRMB meeting, 242 (2018). ismrm18_242 (ismrm members only)

A Bustin, G Ginami, T Correia, T Ismail, R Neji, R Botnar, C Prieto. Whole-heart coronary MRA with sub-millimeter isotropic resolution in four-minute acquisition. Joint ISMRM-ESMRMB meeting, 918 (2018). ismrm18_918 (ismrm members only)

G Nordio, T Schneider, G Cruz, T Correia, C Prieto, R Botnar and M Henningsson. 3D myocardial T1 mapping combined with a 2D fat image navigator for respiratory motion correction. Joint ISMRM-ESMRMB meeting, 4901 (2018). ismrm18_4901 (ismrm members only)

A Bustin, G Ginami, I Rashid, T Correia, T Ismail, R Neji, R Botnar, C Prieto. Highly-accelerated whole-heart 3D CMRA with sub-millimeter isotropic resolution and 3D-PROST reconstruction. BC-ISMRM meeting (2018).

T Correia, G Cruz, C Escobar, R Botnar and C Prieto. Accelerated motion compensated isotropic 3D coronary MRA using variable density Cartesian sampling. 25th ISMRM meeting, 1022 (2017). ismrm17_1022 (ismrm members only)

T Correia, G Cruz, R Botnar and C Prieto. Accelerated 3D coronary MRA using non-rigid motion corrected regularized reconstruction. 24th ISMRM meeting, 4243 (2016). ismrm16_4243 (ismrm members only)

S Kumar, N Lockwood, M Ramel, T Correia, M Ellis, Y Alexandrov, N Andrews, L Bugeon, M Dallman, S Brandner, S Arridge, M Katan, J McGinty, P Frankel, P French. In vivo multiplexed OPT and FLIM OPT of an adult zebrafish cancer disease model. in Biomedical Optics 2016, OSA Technical Digest (Optical Society of America), paper CTu4A.2 (2016). https://doi.org/10.1364/CANCER.2016.CTu4A.2

S Kumar, N Lockwood, N Andrews, T Correia, M Ramel, Y Alexandrov, M Katan, L Bugeon, M Dallman, S Arridge, P Frankel, J McGinty, P French. Rapid in-vivo Optical Projection Tomography of Larval and Adult Zebrafish Disease Models with Angular Multiplexing and FLIM-FRET. in Optics in the Life Sciences, OSA Technical Digest (Optical Society of America), paper OT2D.2 (2015). https://doi.org/10.1364/BODA.2015.OT2D.2

M Ramel, N Andrews, N Lockwood, S Kumar, A Frolov, T Correia, L Bugeon, S Arridge, M Katan, J Mcginty, P French, P Frankel, M Dallman. Development Of Biosensor Transgenic Lines To Monitor Inflammation, Apoptosis, And Carcinogenesis In Live Zebrafish Using Confocal-FLIM And OPT-FLIM. European Zebrafish meeting, P1-085 (2015).

N Lockwood, S Kumar, T Correia, M Ramel, N Andrews, L Bugeon, M Dallman, J McGinty, S Arridge, P French, P Frankel. Global Imaging Of Pathophysiological Angiogenesis In Adult Zebrafish Using Optical Projection Tomography. European Zebrafish meeting, O-V-3 (2015).

J Robertson, A Gosh, T Correia, D Highton, M Smith, C Elwell,T Leung. Effect of Blood in the Cerebrospinal Fluid on the Accuracy of Cerebral Oxygenation Measured by Near Infrared Spectroscopy. In: Swartz H.M., Harrison D.K., Bruley D.F. (eds) Oxygen Transport to Tissue XXXVI. Advances in Experimental Medicine and Biology, vol 812. Springer, New York, NY (2014). https://doi.org/10.1007/978-1-4939-0620-8_31

T Correia, T Rudge, S Arridge. Efficient image reconstruction in fluorescence diffuse optical tomography (fDOT) using data and solution compression. in Diffuse Optical Imaging IV, P. Taroni and H. Dehghani, eds., Vol. 8799 of SPIE Proceedings (Optical Society of America), paper 87990H (2013). https://doi.org/10.1117/12.2032548

Papademetriou MD, Richards J, Correia T et al. Cortical Mapping of 3D Optical Topography in Infants. In: Van Huffel S., Naulaers G., Caicedo A., Bruley D.F., Harrison D.K. (eds) Oxygen Transport to Tissue XXXV. Advances in Experimental Medicine and Biology, vol 789. Springer, New York, NY (2013). https://doi.org/10.1007/978-1-4614-7411-1_61

J Chamorro, JF Abascal, J Aguirre, S Arridge, T Correia, J Ripoll, M Desco, JJ Vaquero. ART with Split Bregman Denoising: a Reconstruction Method for Fluorescence Diffuse Optical Tomography. IEEE Nuclear Science Symposium and Medical Imaging Conference, 268 (2011).

T Correia, A Gibson, J Hebden. Identification of the optimal wavelengths in optical topography using photon density measurement functions. Proc. SPIE 7187, Biomedical Applications of Light Scattering III, 718718 (2009).  https://doi.org/10.1117/12.809295

T Correia, A Gibson, J Hebden. Optimal Selection of the Regularization Parameter for Optical Topography Image Reconstruction. in Biomedical Optics, OSA Technical Digest (CD) (Optical Society of America), paper BSuE49 (2008).https://doi.org/10.1364/BIOMED.2008.BSuE49